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Community Tools

This page lists helpful tools developed by RBK projects as well as the kidney research community.

Kidney Cell Explorer
A shiny app to explore an adult mouse kidney single cell dataset organized with schematics of epithelial cell structures. Includes subsets of the nephrogenic and ureteric epithelial lineages. From the Andy McMahon Lab.
Kidney Interactive Transcriptomics
Searchable web tool that allows users to query gene expression across several single cell datasets from human kidney samples. From the Ben Humphreys Lab.
Kidney-Omics Databases
Links to transcriptomic and proteomic databases for the various renal tubule epithelia compiled from published papers. From Mark Knepper (Epithelial Systems Biology Laboratory, NHLBI).
PIVOT
Platform for Interactive analysis and Visualization Of Transcriptomics data, PIVOT facilitates fast and interactive RNA-Seq data analysis and visualization on a Shiny framework. From the Junhyong Kim Lab.